Index

A

anadir (pyird.utils.irdstream.StreamCommon attribute) apext_flatfield() (pyird.utils.irdstream.Stream2D method) apnormalize() (pyird.utils.irdstream.Stream2D method)

apply_hotpixel_mask() (in module pyird.image.hotpix) aptrace() (in module pyird.image.aptrace) (pyird.utils.irdstream.Stream2D method) at_list() (pyird.utils.fitsset.FitsSet method)

B

band (pyird.utils.irdstream.StreamCommon attribute) base_order_fit (pyird.spec.continuum.ContinuumFit attribute) bias_region() (in module pyird.image.channel)

bias_subtract() (in module pyird.image.bias) bias_subtract_image() (in module pyird.image.bias) blaze_to_df() (pyird.spec.normalize.SpectrumNormalizer method)

C

cal_nct() (in module pyird.image.pattern_model) calc_coarsed_array() (in module pyird.gp.gputils) calc_uncertainty() (pyird.spec.uncertainty.FluxUncertainty method) calc_uncertainty_overlap_region() (pyird.spec.uncertainty.FluxUncertainty method) calculate_residuals() (in module pyird.spec.wavcal) calculate_tmp_uncertainty() (pyird.spec.uncertainty.FluxUncertainty method) calibrate_wavelength() (pyird.utils.irdstream.Stream2D method) channel_cube_to_image() (in module pyird.image.channel) check_channelfile() (in module pyird.spec.wavcal) check_existence() (pyird.utils.irdstream.StreamCommon method) choose_aperture() (pyird.utils.aperture.TraceAperture method) choose_even_aperture() (pyird.utils.aperture.TraceAperture method) choose_mmf1_aperture() (pyird.utils.aperture.TraceAperture method) choose_mmf2_aperture() (pyird.utils.aperture.TraceAperture method) choose_odd_aperture() (pyird.utils.aperture.TraceAperture method)

clean() (pyird.utils.datset.DatSet method) (pyird.utils.fitsset.FitsSet method) clean_pattern() (pyird.utils.irdstream.Stream2D method) comb_readout_noise_wav (pyird.spec.uncertainty.FluxUncertainty attribute) combfile (pyird.spec.uncertainty.FluxUncertainty attribute) combine_normalize() (pyird.spec.normalize.SpectrumNormalizer method) concat_nonoverlap_region() (pyird.spec.normalize.SpectrumNormalizer method) concat_nonoverlap_region_last_order() (pyird.spec.normalize.SpectrumNormalizer method) concat_overlap_region() (pyird.spec.normalize.SpectrumNormalizer method) continuum_nonzero_ind (pyird.spec.continuum.ContinuumFit attribute) continuum_oneord() (pyird.spec.continuum.ContinuumFit method) continuum_rsd() (pyird.spec.continuum.ContinuumFit method) ContinuumFit (class in pyird.spec.continuum) corrected_detector() (in module pyird.plot.detector) cross_section() (in module pyird.image.aptrace)

D

data() (pyird.utils.fitsset.FitsSet method) DatSet (class in pyird.utils.datset) default_readout_noise (pyird.spec.uncertainty.FluxUncertainty attribute) define_former_and_latter() (pyird.spec.normalize.SpectrumNormalizer method) deprecate_kwargs() (in module pyird.utils.decorators) detector_artifact (pyird.utils.irdstream.StreamCommon attribute)

detector_handling() (pyird.utils.irdstream.Stream2D method) determine_gain() (pyird.spec.uncertainty.FluxUncertainty method) determine_readout_noise() (pyird.spec.uncertainty.FluxUncertainty method) determine_scale_continuum() (pyird.spec.normalize.SpectrumNormalizer method) dispcor() (pyird.utils.irdstream.Stream2D method) divide_by_continuum() (pyird.spec.normalize.SpectrumNormalizer method) draw_canvas() (pyird.utils.image_widget.image_1Dand2D method)

E

eopixel_combine() (in module pyird.image.channel) eopixel_split() (in module pyird.image.channel) errfunc() (in module pyird.image.aptrace) (in module pyird.spec.wavcal)

extclean() (pyird.utils.irdstream.StreamCommon method) extpath() (pyird.utils.irdstream.StreamCommon method) extract_trace_info() (pyird.utils.irdstream.Stream2D method)

F

finalize_trace() (in module pyird.io.iraf_trace) first_identification() (in module pyird.spec.wavcal) fit_continuum() (pyird.spec.continuum.ContinuumFit method) fit_ord() (in module pyird.image.aptrace) fit_polynomial() (in module pyird.spec.wavcal) fit_wav_solution() (in module pyird.spec.wavcal) fitfunc() (in module pyird.image.aptrace) fitsid (pyird.utils.irdstream.StreamCommon attribute) (pyird.utils.irdstream.StreamCommon property)

fitsid_already_increment (pyird.utils.irdstream.StreamCommon attribute) fitsid_decrement() (pyird.utils.irdstream.StreamCommon method) fitsid_increment() (pyird.utils.irdstream.StreamCommon method) FitsSet (class in pyird.utils.fitsset) flatpath() (pyird.utils.datset.DatSet method) flatten() (in module pyird.image.oned_extract) (pyird.utils.irdstream.Stream2D method) FluxUncertainty (class in pyird.spec.uncertainty)

G

gain (pyird.spec.uncertainty.FluxUncertainty attribute) gain_h (pyird.spec.uncertainty.FluxUncertainty attribute)

gain_y (pyird.spec.uncertainty.FluxUncertainty attribute) get_radec() (in module pyird.utils.getinfo)

H

hotpix_fits_to_dat() (in module pyird.image.hotpix)

I

identify_channel_mode() (in module pyird.spec.wavcal) identify_hotpix() (in module pyird.image.hotpix) identify_hotpix_sigclip() (in module pyird.image.hotpix) image_1Dand2D (class in pyird.utils.image_widget) image_to_channel_cube() (in module pyird.image.channel) imcomb (pyird.utils.irdstream.StreamCommon attribute) imcombine() (in module pyird.image.operator)

immedian() (pyird.utils.irdstream.Stream2D method) info (pyird.utils.irdstream.StreamCommon attribute) init_band_IRD() (pyird.utils.irdstream.Stream2D method) inst (pyird.utils.irdstream.StreamCommon attribute) interp_nonzero_ind (pyird.spec.normalize.SpectrumNormalizer attribute) inverse (pyird.utils.irdstream.StreamCommon attribute) iterate_fitting() (in module pyird.spec.wavcal)

L

load_fits_data_header() (in module pyird.utils.fitsutils) load_fitsset() (pyird.utils.irdstream.Stream2D method)

loadtermcol() (in module pyird.utils.fitsutils) ls_periodogram() (in module pyird.utils.remove_fringe)

M

make_blaze() (pyird.spec.normalize.SpectrumNormalizer method) make_weight() (in module pyird.spec.wavcal) mask() (pyird.utils.aperture.TraceAperture method) max_order_fit (pyird.spec.continuum.ContinuumFit attribute) maxiter_continuumfit (pyird.spec.continuum.ContinuumFit attribute) maxiter_sigmaclip (pyird.spec.normalize.SpectrumNormalizer attribute) median_profile_xy() (in module pyird.image.pattern_model) median_XY_profile() (in module pyird.image.pattern_model) method (pyird.spec.uncertainty.FluxUncertainty attribute) mk_model() (in module pyird.utils.remove_fringe) mmf1() (pyird.utils.aperture.TraceAperture method) mmf2() (pyird.utils.aperture.TraceAperture method) module pyird pyird.gp pyird.gp.gputils pyird.image pyird.image.aptrace pyird.image.bias pyird.image.channel pyird.image.hotpix pyird.image.mask pyird.image.oned_extract pyird.image.operator pyird.image.pattern_model pyird.image.trace_function pyird.io pyird.io.iraf_trace pyird.io.processRN pyird.io.read_hotpix pyird.io.read_linelist pyird.plot pyird.plot.detector pyird.plot.order pyird.plot.showmask pyird.plot.showspec pyird.spec pyird.spec.continuum pyird.spec.normalize pyird.spec.rsdmat pyird.spec.uncertainty pyird.spec.wavcal pyird.utils pyird.utils.aperture pyird.utils.class_handler pyird.utils.datset pyird.utils.decorators pyird.utils.fitsset pyird.utils.fitsutils pyird.utils.getinfo pyird.utils.image_widget pyird.utils.irdstream pyird.utils.maskcheck pyird.utils.remove_fringe

multiorder_to_rsd() (in module pyird.spec.rsdmat)

N

next_botton() (pyird.utils.image_widget.image_1Dand2D method) normalize() (pyird.spec.normalize.SpectrumNormalizer method)

normalize1D() (pyird.utils.irdstream.Stream2D method) nsigma_continuumfit (pyird.spec.continuum.ContinuumFit attribute) nsigma_sigmaclip (pyird.spec.normalize.SpectrumNormalizer attribute)

O

objective_function() (pyird.spec.normalize.SpectrumNormalizer method)

P

pad_nans_with_xy_median() (in module pyird.image.pattern_model) path() (pyird.utils.datset.DatSet method) (pyird.utils.fitsset.FitsSet method) pixel_df_to_wav_mat() (in module pyird.spec.wavcal) plot_compare_used_thar() (in module pyird.plot.order) plot_crosssection() (in module pyird.plot.order) plot_fitresult_thar() (in module pyird.plot.order) plot_tracelines() (in module pyird.plot.order) plotmask() (in module pyird.utils.maskcheck) print_if_info_is_true() (pyird.utils.irdstream.StreamCommon method) pyird module pyird.gp module pyird.gp.gputils module pyird.image module pyird.image.aptrace module pyird.image.bias module pyird.image.channel module pyird.image.hotpix module pyird.image.mask module pyird.image.oned_extract module pyird.image.operator module pyird.image.pattern_model module pyird.image.trace_function module pyird.io module pyird.io.iraf_trace module pyird.io.processRN module pyird.io.read_hotpix module pyird.io.read_linelist module

pyird.plot module pyird.plot.detector module pyird.plot.order module pyird.plot.showmask module pyird.plot.showspec module pyird.spec module pyird.spec.continuum module pyird.spec.normalize module pyird.spec.rsdmat module pyird.spec.uncertainty module pyird.spec.wavcal module pyird.utils module pyird.utils.aperture module pyird.utils.class_handler module pyird.utils.datset module pyird.utils.decorators module pyird.utils.fitsset module pyird.utils.fitsutils module pyird.utils.getinfo module pyird.utils.image_widget module pyird.utils.irdstream module pyird.utils.maskcheck module pyird.utils.remove_fringe module

Q

quit_me() (pyird.utils.image_widget.image_1Dand2D method)

R

rawdir (pyird.utils.irdstream.StreamCommon attribute) rawtag (pyird.utils.irdstream.StreamCommon attribute) read_hotpix() (in module pyird.io.read_hotpix) read_linelist() (in module pyird.io.read_linelist) read_trace_file() (in module pyird.io.iraf_trace) read_trace_file_one() (in module pyird.io.iraf_trace) readout_noise (pyird.spec.uncertainty.FluxUncertainty attribute)

remove_bias() (pyird.utils.irdstream.StreamCommon method) remove_fringe() (pyird.utils.irdstream.Stream1D method) remove_fringe_order() (in module pyird.utils.remove_fringe) rename_kwargs() (in module pyird.utils.decorators) revert_channel_cube() (in module pyird.image.channel) rotate (pyird.utils.irdstream.StreamCommon attribute) rsd_order_medfilt() (in module pyird.spec.rsdmat)

S

scale_normalized_mad (pyird.spec.uncertainty.FluxUncertainty attribute) second_identification() (in module pyird.spec.wavcal) set_aperture() (in module pyird.image.aptrace) set_single_mmf() (pyird.utils.aperture.TraceAperture method) show_emission_position() (pyird.utils.image_widget.image_1Dand2D method) show_hotpix() (in module pyird.plot.showmask) show_mask() (in module pyird.plot.showmask) show_maskedpix() (in module pyird.plot.showmask) show_profile() (in module pyird.plot.detector) show_spec_to_image() (pyird.utils.image_widget.image_1Dand2D method)

show_wavcal_spectrum() (in module pyird.plot.showspec) sigmaclip() (in module pyird.spec.wavcal) specmedian() (pyird.utils.irdstream.Stream1D method) SpectrumNormalizer (class in pyird.spec.normalize) split_tail_by_wavhead() (pyird.spec.uncertainty.FluxUncertainty method) Stream1D (class in pyird.utils.irdstream) Stream2D (class in pyird.utils.irdstream) StreamCommon (class in pyird.utils.irdstream) streamid (pyird.utils.irdstream.StreamCommon attribute) sum_weighted_apertures() (in module pyird.image.oned_extract)

T

title_emission_position() (pyird.utils.image_widget.image_1Dand2D method) title_spec_to_image() (pyird.utils.image_widget.image_1Dand2D method) tocvsargs (pyird.utils.irdstream.StreamCommon attribute) trace() (in module pyird.image.mask)

trace_from_iraf_trace_file() (in module pyird.image.mask) trace_legendre() (in module pyird.image.trace_function) trace_pix() (in module pyird.image.aptrace) TraceAperture (class in pyird.utils.aperture) trim_nonzero_flux() (pyird.spec.normalize.SpectrumNormalizer method)

U

update_attr() (in module pyird.utils.class_handler)

W

warn_single_mmf() (pyird.utils.aperture.TraceAperture method) wav_boundary_yj_and_h (pyird.spec.uncertainty.FluxUncertainty attribute) wavcal_thar() (in module pyird.spec.wavcal)

wrap_kawahara_processRN() (in module pyird.io.processRN) write_df_spec_wav() (pyird.utils.irdstream.Stream2D method) write_fits_data_header() (in module pyird.utils.fitsutils)