Index

A

apext_flatfield() (pyird.utils.irdstream.Stream2D method) apnormalize() (pyird.utils.irdstream.Stream2D method) apply_hotpixel_mask() (in module pyird.image.hotpix)

aptrace() (in module pyird.image.aptrace) (pyird.utils.irdstream.Stream2D method) at_list() (pyird.utils.fitsset.FitsSet method)

B

bias_region() (in module pyird.image.channel) bias_subtract() (in module pyird.image.bias)

bias_subtract_image() (in module pyird.image.bias) blaze_to_df() (pyird.spec.normalize.SpectrumNormalizer method)

C

cal_nct() (in module pyird.image.pattern_model) calc_coarsed_array() (in module pyird.gp.gputils) calc_uncertainty() (pyird.spec.uncertainty.FluxUncertainty method) calc_uncertainty_overlap_region() (pyird.spec.uncertainty.FluxUncertainty method) calculate_residuals() (in module pyird.spec.wavcal) calculate_tmp_uncertainty() (pyird.spec.uncertainty.FluxUncertainty method) calibrate_wavelength() (pyird.utils.irdstream.Stream2D method) channel_cube_to_image() (in module pyird.image.channel) check_existence() (pyird.utils.irdstream.StreamCommon method) choose_mmf1_aperture() (pyird.utils.aperture.TraceAperture method) choose_mmf2_aperture() (pyird.utils.aperture.TraceAperture method) clean() (pyird.utils.datset.DatSet method) (pyird.utils.fitsset.FitsSet method)

clean_pattern() (pyird.utils.irdstream.Stream2D method) combine_normalize() (pyird.spec.normalize.SpectrumNormalizer method) concat_nonoverlap_region() (pyird.spec.normalize.SpectrumNormalizer method) concat_nonoverlap_region_last_order() (pyird.spec.normalize.SpectrumNormalizer method) concat_overlap_region() (pyird.spec.normalize.SpectrumNormalizer method) continuum_oneord() (pyird.spec.continuum.ContinuumFit method) continuum_rsd() (pyird.spec.continuum.ContinuumFit method) ContinuumFit (class in pyird.spec.continuum) corrected_detector() (in module pyird.plot.detector) cp() (in module pyird.utils.directory_util) cross_section() (in module pyird.image.aptrace)

D

data() (pyird.utils.fitsset.FitsSet method) DatSet (class in pyird.utils.datset) define_former_and_latter() (pyird.spec.normalize.SpectrumNormalizer method) detect_peaks() (in module pyird.utils.detect_peaks) detector_handling() (pyird.utils.irdstream.Stream2D method)

determine_gain() (pyird.spec.uncertainty.FluxUncertainty method) determine_readout_noise() (pyird.spec.uncertainty.FluxUncertainty method) determine_scale_continuum() (pyird.spec.normalize.SpectrumNormalizer method) dispcor() (pyird.utils.irdstream.Stream2D method) divide_by_continuum() (pyird.spec.normalize.SpectrumNormalizer method) draw_canvas() (pyird.utils.image_widget.image_1Dand2D method)

E

eopixel_combine() (in module pyird.image.channel) eopixel_split() (in module pyird.image.channel) errfunc() (in module pyird.image.aptrace) (in module pyird.spec.wavcal)

extclean() (pyird.utils.irdstream.StreamCommon method) extpath() (pyird.utils.irdstream.StreamCommon method) extract_trace_info() (pyird.utils.irdstream.Stream2D method)

F

finalize_trace() (in module pyird.io.iraf_trace) first_identification() (in module pyird.spec.wavcal) fit_continuum() (pyird.spec.continuum.ContinuumFit method) fit_ord() (in module pyird.image.aptrace) fit_polynomial() (in module pyird.spec.wavcal) fit_wav_solution() (in module pyird.spec.wavcal) fitfunc() (in module pyird.image.aptrace)

fitsid (pyird.utils.irdstream.StreamCommon property) fitsid_decrement() (pyird.utils.irdstream.StreamCommon method) fitsid_increment() (pyird.utils.irdstream.StreamCommon method) FitsSet (class in pyird.utils.fitsset) flatpath() (pyird.utils.datset.DatSet method) flatten() (in module pyird.image.oned_extract) (pyird.utils.irdstream.Stream2D method) FluxUncertainty (class in pyird.spec.uncertainty)

G

get_radec() (in module pyird.utils.getinfo)

H

hotpix_fits_to_dat() (in module pyird.image.hotpix)

I

identify_channel_mode() (in module pyird.spec.wavcal) identify_hotpix() (in module pyird.image.hotpix) identify_hotpix_sigclip() (in module pyird.image.hotpix) image_1Dand2D (class in pyird.utils.image_widget)

image_to_channel_cube() (in module pyird.image.channel) imcombine() (in module pyird.image.operator) immedian() (pyird.utils.irdstream.Stream2D method) iterate_fitting() (in module pyird.spec.wavcal)

L

load_fits_data_header() (in module pyird.utils.fitsutils) load_fitsset() (pyird.utils.irdstream.Stream2D method)

loadtermcol() (in module pyird.utils.fitsutils) ls_periodogram() (in module pyird.utils.remove_fringe)

M

make_blaze() (pyird.spec.normalize.SpectrumNormalizer method) make_weight() (in module pyird.spec.wavcal) mask() (pyird.utils.aperture.TraceAperture method) median_profile_xy() (in module pyird.image.pattern_model) median_XY_profile() (in module pyird.image.pattern_model) mk_model() (in module pyird.utils.remove_fringe) mmf1() (pyird.utils.aperture.TraceAperture method) mmf2() (pyird.utils.aperture.TraceAperture method) module pyird pyird.gp pyird.gp.gputils pyird.image pyird.image.apall pyird.image.aptrace pyird.image.bias pyird.image.channel pyird.image.hotpix pyird.image.mask pyird.image.oned_extract pyird.image.operator pyird.image.pattern_model pyird.image.trace_function pyird.io pyird.io.iraf_trace pyird.io.processRN pyird.io.read_hotpix pyird.io.read_linelist pyird.plot pyird.plot.detector pyird.plot.order pyird.plot.showmask pyird.plot.showspec pyird.spec pyird.spec.continuum pyird.spec.normalize pyird.spec.rsdmat pyird.spec.uncertainty pyird.spec.wavcal pyird.utils pyird.utils.aperture pyird.utils.calref pyird.utils.class_handler pyird.utils.datset pyird.utils.detect_peaks pyird.utils.directory_util pyird.utils.fitsset pyird.utils.fitsutils pyird.utils.getinfo pyird.utils.image_widget pyird.utils.irdstream pyird.utils.maskcheck pyird.utils.pyird_version pyird.utils.readapfile pyird.utils.remove_fringe

multiorder_to_rsd() (in module pyird.spec.rsdmat)

N

next_botton() (pyird.utils.image_widget.image_1Dand2D method)

normalize() (pyird.spec.normalize.SpectrumNormalizer method) normalize1D() (pyird.utils.irdstream.Stream2D method)

O

objective_function() (pyird.spec.normalize.SpectrumNormalizer method)

P

pad_nans_with_xy_median() (in module pyird.image.pattern_model) path() (pyird.utils.datset.DatSet method) (pyird.utils.fitsset.FitsSet method) pixel_df_to_wav_mat() (in module pyird.spec.wavcal) plot_compare_used_thar() (in module pyird.plot.order) plot_crosssection() (in module pyird.plot.order) plot_fitresult_thar() (in module pyird.plot.order) plot_tracelines() (in module pyird.plot.order) plotmask() (in module pyird.utils.maskcheck) print_if_info_is_true() (pyird.utils.irdstream.StreamCommon method) pyird module pyird.gp module pyird.gp.gputils module pyird.image module pyird.image.apall module pyird.image.aptrace module pyird.image.bias module pyird.image.channel module pyird.image.hotpix module pyird.image.mask module pyird.image.oned_extract module pyird.image.operator module pyird.image.pattern_model module pyird.image.trace_function module pyird.io module pyird.io.iraf_trace module pyird.io.processRN module pyird.io.read_hotpix module pyird.io.read_linelist module pyird.plot module pyird.plot.detector module

pyird.plot.order module pyird.plot.showmask module pyird.plot.showspec module pyird.spec module pyird.spec.continuum module pyird.spec.normalize module pyird.spec.rsdmat module pyird.spec.uncertainty module pyird.spec.wavcal module pyird.utils module pyird.utils.aperture module pyird.utils.calref module pyird.utils.class_handler module pyird.utils.datset module pyird.utils.detect_peaks module pyird.utils.directory_util module pyird.utils.fitsset module pyird.utils.fitsutils module pyird.utils.getinfo module pyird.utils.image_widget module pyird.utils.irdstream module pyird.utils.maskcheck module pyird.utils.pyird_version module pyird.utils.readapfile module pyird.utils.remove_fringe module

Q

quit_me() (pyird.utils.image_widget.image_1Dand2D method)

R

read_hotpix() (in module pyird.io.read_hotpix) read_linelist() (in module pyird.io.read_linelist) read_trace_file() (in module pyird.io.iraf_trace) read_trace_file_one() (in module pyird.io.iraf_trace) readap() (in module pyird.utils.readapfile)

remove_bias() (pyird.utils.irdstream.StreamCommon method) remove_fringe() (pyird.utils.irdstream.Stream1D method) remove_fringe_order() (in module pyird.utils.remove_fringe) revert_channel_cube() (in module pyird.image.channel) rsd_order_medfilt() (in module pyird.spec.rsdmat)

S

second_identification() (in module pyird.spec.wavcal) set_aperture() (in module pyird.image.aptrace) show_emission_position() (pyird.utils.image_widget.image_1Dand2D method) show_hotpix() (in module pyird.plot.showmask) show_mask() (in module pyird.plot.showmask) show_maskedpix() (in module pyird.plot.showmask) show_profile() (in module pyird.plot.detector) show_spec_to_image() (pyird.utils.image_widget.image_1Dand2D method)

show_wavcal_spectrum() (in module pyird.plot.showspec) sigmaclip() (in module pyird.spec.wavcal) specmedian() (pyird.utils.irdstream.Stream1D method) SpectrumNormalizer (class in pyird.spec.normalize) split_tail_by_wavhead() (pyird.spec.uncertainty.FluxUncertainty method) Stream1D (class in pyird.utils.irdstream) Stream2D (class in pyird.utils.irdstream) StreamCommon (class in pyird.utils.irdstream) sum_weighted_apertures() (in module pyird.image.oned_extract)

T

title_emission_position() (pyird.utils.image_widget.image_1Dand2D method) title_spec_to_image() (pyird.utils.image_widget.image_1Dand2D method) trace() (in module pyird.image.mask) trace_from_iraf_trace_file() (in module pyird.image.mask)

trace_legendre() (in module pyird.image.trace_function) trace_pix() (in module pyird.image.aptrace) TraceAperture (class in pyird.utils.aperture) trim_nonzero_flux() (pyird.spec.normalize.SpectrumNormalizer method)

U

update_attr() (in module pyird.utils.class_handler)

W

warn_single_mmf() (pyird.utils.aperture.TraceAperture method) wavcal_thar() (in module pyird.spec.wavcal) wrap_kawahara_processRN() (in module pyird.io.processRN)

write_df_spec_wav() (pyird.utils.irdstream.Stream2D method) write_fits_data_header() (in module pyird.utils.fitsutils) writeap() (in module pyird.utils.readapfile)