exojax.plot package

Submodules

exojax.plot.atmplot module

plotting tool for atmospheric structure.

exojax.plot.atmplot.factor_labelx_for_unit()
exojax.plot.atmplot.imshow_custom(vmin, vmax, ltau, extent, ax)
exojax.plot.atmplot.plot_maxpoint(mask, Parr, maxcf, maxcia, mol='CO')

Plotting max contribution function points.

Parameters:

  • mask – weak line mask

  • Parr – Paressure array

  • maxcf – max contribution function of the molecules

  • maxcia – max contribution function of CIA

  • mol – molecular name

exojax.plot.atmplot.plotcf(nus, dtauM, Tarr, Parr, dParr, unit='cm-1', log=False, normalize=True, cmap='bone_r', optarr=None, leftxlabel='Warning: specify leftxpanel', leftxlog=False)

plot the contribution function. This function gives a plot of contribution function, optionally w/ a T-P (or any) profile.

Parameters:

  • nus – wavenumber

  • dtauM – dtau matrix

  • Tarr – temperature profile

  • Parr – perssure profile

  • dParr – perssure difference profile

  • unit – x-axis unit=cm-1, um (wavelength microns), nm = (wavelength nm), AA = (wavelength Angstrom),

  • log – True=use log10(cf)

  • normalize – normalize cf for each wavenumber?

  • cmap – colormap

  • optarr – the optional profile X, i.e. a X-P profile of the left panel, instead of a T-P profile

  • leftxlabel – xlable of the left panel

  • leftxlog – if True, log for the x grid of the left panel

Returns:

contribution function

exojax.plot.atmplot.plottau(nugrid, dtauM, Tarr=None, Parr=None, unit=None, mode=None, vmin=-3, vmax=3)

Plot optical depth (tau). This function gives the color map of log10(tau) (or log10(dtau)), optionally w/ a T-P profile.

Parameters:

  • nus – wavenumber in linear scale

  • dtauM – dtau matrix

  • Tarr – temperature profile

  • Parr – perssure profile

  • unit – x-axis unit=um (wavelength microns), nm = (wavelength nm), AA = (wavelength Angstrom),

  • mode – mode=None (plotting tau), mode=dtau (plotting delta tau for each layer)

  • vmin – color value min (default=-3)

  • vmax – color value max (default=3)

exojax.plot.ditplot module

Plotting tool for DIT/MODIT.

exojax.plot.ditplot.plot_dgm(dgm_sigmaD, dgm_gammaL, sigmaDM, gammaLM, js=0, je=10)

plot DIT grid matrix (dgm)

Parameters:

  • dgm_sigmaD – DIT grid matrix of sigmaD (Nlayer x Ngrid)

  • dgm_gammaL – DIT grid matrix of gammaL (Nlayer x Ngrid)

  • sigmaDM – sigmaD matrix (Nlayer x Nline)

  • gammaLM – gammaL matrix (Nlayer x Nline)

  • js – layer index for start to display

  • je – layer index for end to display

exojax.plot.ditplot.plot_dgmn(Parr, dgm_ngammaL, ngammaLM, js, je)

plot MODIT grid matrix (dgm)

Parameters:

  • Parr – pressure layer (Nlayer)

  • dgm_ngammaL – DIT grid matrix of ngammaL (Nlayer x Ngrid)

  • ngammaLM – ngammaL matrix (Nlayer x Nline)

  • js – layer index for start to display

  • je – layer index for end to display

exojax.plot.opaplot module

exojax.plot.opaplot.plot_broadening_parameters_grids(ngamma_ref_grid, n_Texp_grid, nu_grid, resolution, gamma_ref_in, n_Texp_in, crit, figname)
exojax.plot.opaplot.plot_lbd(lbd_coeff, elower_grid, ngamma_ref_grid, n_Texp_grid, multi_index_uniqgrid, nu_grid, vmin=-70, vmax=-20, order=0, number_of_ticks=10)

Plots the line basis density

Note

See #548 for more details.

Examples

nu_grid, wav, resolution = wavenumber_grid(

22900.0, 27000.0, 200000, unit=”AA”, xsmode=”premodit”

) mdb = MdbExomol(β€œ.database/CO/12C-16O/Li2015/”, nurange=nu_grid) opa = OpaPremodit(mdb, nu_grid, auto_trange=[500.0, 1000.0], dit_grid_resolution=0.2) lbd, midx, gegrid, gngamma, gn, R, pm = opa.opainfo plot_lbd(lbd, gegrid, gngamma, gn, midx, nu_grid)

Parameters:

  • lbd_coeff (array) – line basis density coefficients

  • elower_grid (array) – elower grid

  • ngamma_ref_grid (array) – n_gamma_ref grid

  • n_Texp_grid (array) – n_Texp grid

  • multi_index_uniqgrid (array) – multi index grid

  • nu_grid (array) – wavenumber grid

  • vmin (int, optional) – min value of color. Defaults to -70.

  • vmax (int, optional) – max value of color. Defaults to -20.

  • order (int, optional) – order of the LBD coefficient. Defaults to 0.

  • number_of_ticks (int, optional) – number of ticks. Defaults to 10.

exojax.plot.rtplot module

exojax.plot.rtplot.comparison_with_pure_absorption(cumThat, Qhat, spectrum, trans_coeff, scat_coeff, piB)
exojax.plot.rtplot.panel_imshow(val1, val2, title1, title2)

Module contents