Basics
==============

.. toctree::
   :maxdepth: 1

   tutorials/get_started.rst
   tutorials/optimize_spectrum_JAXopt.rst
   tutorials/reverse_premodit.rst
   

Applications
====================

   
Retrieval More
--------------------------

.. toctree::
   :maxdepth: 1

   tutorials/reverse_precompute_grid.rst


Transmission Spectra
----------------------------

.. toctree::
   :maxdepth: 1

   tutorials/Transmission_beta.rst


Molecular/Atomic/Continuum Databases
---------------------------------------

.. toctree::
   :maxdepth: 1

   tutorials/select_quantum_states.rst
   tutorials/branch.rst
   tutorials/Fortrat.rst
   tutorials/CIA_opacity.rst

Tuning ExoJAX
===========================

.. toctree::
   :maxdepth: 1

   userguide/memorysetting.rst	
   tutorials/elower_setting.rst

Multi Molecule/Segments Mdb and Opa Handler
=============================================

.. toctree::
   :maxdepth: 1

   tutorials/multimol.rst


Manual Settings of Opacity (not using opa)
==============================================================

You do not need `opa` nor `art` to compute opacity and spectra, if you want. 

Cross Section using Various Opacity Calculators
--------------------------------------------------------

.. toctree::
   :maxdepth: 1

   tutorials/opacity.rst
   tutorials/Cross_Section_using_Precomputation_Modified_Discrete_Integral_Transform.rst
   tutorials/Comparing_HITEMP_and_ExoMol.rst
   

Others
================

Micro Chemical/Physical Processes
--------------------------------------

.. toctree::
   :maxdepth: 1

   tutorials/Ackerman_and_Marley_cloud_model.rst
   tutorials/Terminal_Velocity_of_Cloud_Particles.rst   
   
Macro Physical Processes
--------------------------------------

.. toctree::
   :maxdepth: 1

   tutorials/Rigid_Rotation.rst


Others
------------------

.. toctree::
   :maxdepth: 1

   tutorials/Using_FastChem2_to_calculate_the_chemical_abundances.rst
   tutorials/hjerting.rst
   tutorials/pure_absorption_rt.rst
   tutorials/voigt_function.rst